Stem-loop ath-MIR5635c

Accession

MI0019239

Description

Arabidopsis thaliana ath-MIR5635c precursor miRNA MIR5635

Gene
family

RF03444; MIR5635

Literature search

1 open access papers mention ath-MIR5635c
(1 sentences)

Sequence

61259 reads, 380.0 reads per million, 183 experiments

uugacccagccaaaucgacucaccguuaaaacuucuuaacagcucuccuaacagcauaacuAACAACUGUUUUCGUCCUUAAACCaacgauaacagcuguuaggccauguuuuguaacggcuguuaggagcgcUGUUAAGGAGUGUUAACGGUGagucgauuuggccgggucaa
.((((((.(((((((((((((((((((((.(((((((((((((.(((((((((((....((((((.(((((.((((..........)))).))))).)))))).....(((....))).))))))))))).))))))))))))).))))))))))))))))))))).)))))).

Structure

u      a                     a             u           ------------auaa      A     U    CCUU 
 ugaccc gccaaaucgacucaccguuaa acuucuuaacagc cuccuaacagc                cuAACA CUGUU UCGU    A
 |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||                |||||| ||||| ||||     
 acuggg cgguuuagcugaGUGGCAAUU UGAGGAAUUGUcg gaggauugucg                gauugu gacaa agca    A
a      c                     G             c           gcaauguuuuguaccg      c     u    aCCA 

Annotation confidence Low

Genome context

chr4: 13316754-13316927 [-]

Mature ath-miR5635c-5p

• Accession: MIMAT0053953
• Description: Arabidopsis thaliana ath-miR5635c-5p mature miRNA
• Sequence: 62 - AACAACUGUUUUCGUCCUUAAACC - 85
• Evidence: experimental ; unknown

Mature ath-miR5635c-3p

• Accession: MIMAT0022428
• Description: Arabidopsis thaliana ath-miR5635c-3p mature miRNA
• Sequence: 134 - UGUUAAGGAGUGUUAACGGUG - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176