Stem-loop ath-MIR5656

Accession

MI0019240

Description

Arabidopsis thaliana ath-MIR5656 precursor miRNA

Sequence

aucuuucuugacaaaucauaacaacuuugguuaaaagguuucgaaaacucaaccucuucuucagucucucucuuuccaaaagggaaagACUGAAGUAGAGAUUGGGUUUccgauaccuuuuggcccaugucguuaugauuugucgaggaaggu
((((((((((((((((((((((.((...(((((((((((.(((.((((((((.((((.(((((((((.(((((((...))))))).))))))))).)))).)))))))).))).)))))))))))...)).))))))))))))))))))))))

Structure

                      a  uuu           u   a        c    u         c       c 
aucuuucuugacaaaucauaac ac   gguuaaaaggu ucg aaacucaa cucu cuucagucu ucucuuu  
|||||||||||||||||||||| ||   ||||||||||| ||| |||||||| |||| ||||||||| ||||||| c
uggaaggagcuguuuaguauug ug   ccgguuuucca agc UUUGGGUU GAGA GAAGUCAga agggaaa  
                      c  uac           u   c        A    U         a       a 

Annotation confidence Not enough data

Genome context

chr1: 1727263-1727415 [+]

Mature ath-miR5656

• Accession: MIMAT0022429
• Description: Arabidopsis thaliana ath-miR5656 mature miRNA
• Sequence: 89 - ACUGAAGUAGAGAUUGGGUUU - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176