Stem-loop ath-MIR5658

Accession

MI0019242

Description

Arabidopsis thaliana ath-MIR5658 precursor miRNA

Literature search

2 open access papers mention ath-MIR5658
(2 sentences)

Sequence

3547 reads, 43.0 reads per million, 176 experiments

agAUGAUGAUGAUGAUGAUGAAAcagaaucaguaagaagcuucuucuucuuaggAGGAGGAGGAAGAUUGGUuucaucaucaucaccaguugaa
......((.(((((((((((((((..((((.........((((((((((....))))))))))..)))).))))))))))))))).))......

Structure

agAUGA  A               ag    aguaagaag          u 
      UG UGAUGAUGAUGAAAc  aauc         cuucuucuuc u
      || |||||||||||||||  ||||         ||||||||||  
      ac acuacuacuacuuUG  UUAG         GGAGGAGGAg a
aaguug  c               -G    -------AA          g 

Annotation confidence Low

Genome context

chr4: 18485438-18485531 [-]

Mature ath-miR5658-5p

• Accession: MIMAT0022431
• Description: Arabidopsis thaliana ath-miR5658-5p mature miRNA
• Sequence: 3 - AUGAUGAUGAUGAUGAUGAAA - 23
• Evidence: experimental ; Illumina [1]

Mature ath-miR5658-3p

• Accession: MIMAT0053956
• Description: Arabidopsis thaliana ath-miR5658-3p mature miRNA
• Sequence: 55 - AGGAGGAGGAAGAUUGGU - 72
• Evidence: experimental ; unknown

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176