Stem-loop ath-MIR5645d

Accession

MI0019244

Description

Arabidopsis thaliana ath-MIR5645d precursor miRNA

Sequence

44916 reads, 448.0 reads per million, 185 experiments

uuucgaaauaaaugacaaaguuuuuguugacuugucAUUUGAGUCAUGUCGUUAAGUAGGuugacauaauuuuuuuacggcguuaaugucucguuuaucuccucuguuagaacaaaacaacguuguuuauugcagcucguuuucucuauugaaacaaauuuaaaccuuaaauucccaaaucgauuuuauuaucugcgauuuugaggucaauguggguaugugauuuugagauaaugaaaucgauuuagggguuuauauuuauuucaagagacaaaacaacgucguuuuaaaaaaaaaagaaaaaaaaaaaaaaaaaaaacaacgucguuuugucuuuucaauaaacgacguuguuuuguucuaauagauuaaauaaacaagacauuaacgccguaaaaaaauuccguuaaccuAUUUAACGUUAUGACUCAAAUGGCAagucaacaaaaauuuugucuuuuauuucgaaa
.(((((((((((.(((((((((((((((((((((((((((((((((((.((((((((((((((((..((((((((((((((((((((((((.((((((....((((((((((((((((((((((((((((((................((((((.((((.((((((.......((.((((((((((((((((((.(((..(((.(.(((...))).)...)))..))))))))))))))))))))).)))))))).)))).))))))((((((((((.((((.(((((...........................))))).)))).))))))))))..))))))))))))))))))))))))))))))....)))))).))))))))))))))))))))))))..)))))))))))))))).))))))))))))))))))))))))))))))))))).))))))))))).

Structure

u           u                                   U                au                        c      cucc                              -------------------------------------------------------cagcucguuuucucua      c    u      uuaaauu  c                  g   uu   --a g   a 
 uucgaaauaaa gacaaaguuuuuguugacuugucAUUUGAGUCAUG CGUUAAGUAGGuugac  aauuuuuuuacggcguuaaugucu guuuau    ucuguuagaacaaaacaacguuguuuauug                                                                       uugaaa aaau uaaacc       cc aaaucgauuuuauuaucu cga  uug   g uca  
 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||    ||||||||||||||||||||||||||||||                                                                       |||||| |||| ||||||       || |||||||||||||||||| |||  |||   | ||| u
 aagcuuuauuu cuguuuuaaaaacaacugaACGGUAAACUCAGUAU GCAAUUUAuccaauug  uuaaaaaaaugccgcaauuacaga caaaua    agauaaucuuguuuuguugcagcaaauaac                                                                       aacuuu uuua auuugg       gg uuuagcuaaaguaauaga guu  agu   u ggu  
a           u                                   U                cc                        a      aauu                              uuuucuguuuugcugcaacaaaaaaaaaaaaaaaaaaaagaaaaaaaaaauuuugcugcaacaaaacagag      a    u      -------  a                  -   uu   gua g   g 

Annotation confidence Medium

Genome context

chr1: 16116572-16117041 [+]

Mature ath-miR5645d-5p

• Accession: MIMAT0022433
• Description: Arabidopsis thaliana ath-miR5645d-5p mature miRNA
• Sequence: 37 - AUUUGAGUCAUGUCGUUAAGUAGG - 60
• Evidence: experimental ; Illumina [1]

Mature ath-miR5645d-3p

• Accession: MIMAT0053958
• Description: Arabidopsis thaliana ath-miR5645d-3p mature miRNA
• Sequence: 414 - AUUUAACGUUAUGACUCAAAUGGCA - 438
• Evidence: experimental ; unknown

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176