Stem-loop ath-MIR1888b

Accession

MI0019247

Description

Arabidopsis thaliana ath-MIR1888b precursor miRNA

Literature search

1 open access papers mention ath-MIR1888b
(1 sentences)

Sequence

10174 reads, 62.0 reads per million, 177 experiments

uauuggugguaucuuacccaaauucUUAGGCUAAGAUUUGUGAAGAaaaggcucuuauauaagagcuuuuacucuuauauuuaaguuuuuucuucccaaaucuuagauuAAGAUUUGGCUAAGAUACcacuaaua
((((((((((((((((.((((((.((((..((((((((((.((((((((((((...(((((((((......)))))))))...)))))))))))).))))))))))..)))))))))).))))))))))))))))

Structure

                c      u    GG          U            cuu         cu 
uauuggugguaucuua ccaaau cUUA  CUAAGAUUUG GAAGAaaaggcu   auauaagag  u
|||||||||||||||| |||||| ||||  |||||||||| ||||||||||||   |||||||||   
auaaucacCAUAGAAU GGUUUA GAAu  gauucuaaac cuucuuuuuuga   uauauucuc  u
                C      -    ua          c            auu         au 

Annotation confidence Low

Genome context

chr3: 22537283-22537417 [+]

Mature ath-miR1888b-5p

• Accession: MIMAT0022436
• Description: Arabidopsis thaliana ath-miR1888b-5p mature miRNA
• Sequence: 26 - UUAGGCUAAGAUUUGUGAAGA - 46
• Evidence: experimental ; Illumina [1]

Mature ath-miR1888b-3p

• Accession: MIMAT0053961
• Description: Arabidopsis thaliana ath-miR1888b-3p mature miRNA
• Sequence: 110 - AAGAUUUGGCUAAGAUAC - 127
• Evidence: experimental ; unknown

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176