miRBase entry: ath-MIR5661

Stem-loop ath-MIR5661


Accession
MI0019249
Description
Arabidopsis thaliana ath-MIR5661 precursor miRNA


Sequence

630 reads, 7.0 reads per million, 117 experiments
uaAGAGGUACAUCAUGUAGUCUGaaaugguuuugcuguacucuuugcuucugacauuuCUUGCUGCAUUGUCUACUUCUGU
..(((((((.((.(((((((..((((((.....((..........))......))))))..))))))).)).)))))))..

Structure
ua       C  C       CU      -guuuu  ugua 
  AGAGGUA AU AUGUAGU  Gaaaug      gc    c
  ||||||| || |||||||  ||||||      ||     
  UCUUCAU UG UACGUCG  Cuuuac      cg    u
UG       C  U       UU      agucuu  uuuc 


Annotation confidence Medium
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Genome context
chr4: 10449329-10449409 [+]

Database links

Mature ath-miR5661-5p

Accession MIMAT0022438
Description Arabidopsis thaliana ath-miR5661-5p mature miRNA
Sequence 3 - AGAGGUACAUCAUGUAGUCUG - 23
Evidence experimental
Illumina [1]

Mature ath-miR5661-3p

Accession MIMAT0053963
Description Arabidopsis thaliana ath-miR5661-3p mature miRNA
Sequence 59 - CUUGCUGCAUUGUCUACUUCUGU - 81
Evidence experimental
unknown

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176