miRBase entry: ath-MIR5662

Stem-loop ath-MIR5662


Accession
MI0019250
Description
Arabidopsis thaliana ath-MIR5662 precursor miRNA


Sequence

cauuuuuaauagugaucuuuauauuuuccucuauuuauagaggugacucuauuuuaaaggcauuauguucaaauggucaccucuaaaauagaguuuucucuauaauagaggaagaaauagaaauauuuacuuuuugucucuauaaauagagaucucuacaauucaucucuaauuuuucuucuauuuuugaggaaacucuauuuuagaggugaccauuggagcacaaugcuucuaaaauagaggcaccucuaaaauagagaaaauuauAGAGGUGACCAUUGGAGAUG
((((((((((.((.(((((((((.(((.((((((((.((((((((.((((((((((.(((((((.(((((.(((((((((((((((((((((((((((((...(((((((((((((.((((..............(((((((....)))))))..............)))).)))))))))))))...))))))))))))))))))))))))))))).))))).))))))).)))))))))).)))))))))))))))).))).))))))))).)).))))))))))

Structure
          a  g         u   c        a        a          a       a     a                             uau             a    aauauuuacuuuuu       u 
cauuuuuaau gu aucuuuaua uuu cucuauuu uagaggug cucuauuuua aggcauu uguuc aauggucaccucuaaaauagaguuuucuc   aauagaggaagaa uaga              gucucua a
|||||||||| || ||||||||| ||| |||||||| |||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||   ||||||||||||| ||||              |||||||  
GUAGAGGUUA CA UGGAGAuau aaa gagauaaa aucuccac gagauaaaau uucguaa acgag uuaccaguggagauuuuaucucaaaggag   uuaucuucuuuuu aucu              uagagau a
          C  G         u   a        -        g          c       c     g                             uuu             a    cuacuuaacaucuc       a 


Annotation confidence Not enough data
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Genome context
chr2: 16798584-16798870 [+]

Database links

Mature ath-miR5662

Accession MIMAT0022439
Description Arabidopsis thaliana ath-miR5662 mature miRNA
Sequence 268 - AGAGGUGACCAUUGGAGAUG - 287
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176