miRBase entry: ath-MIR5663

Stem-loop ath-MIR5663


Accession
MI0019251
Description
Arabidopsis thaliana ath-MIR5663 precursor miRNA


Sequence

35359 reads, 242.0 reads per million, 184 experiments
uuaUAGCUAAGGAUUUGCAUUCUCaugauugaauucuaguauauaguaacauuauagaagaaagucuauaaacacuaaacuCAAUCAUGAGAAUGCAAAUCCuuagcuauau
.(((((((((((((((((((((((((((((((.((.((((.....((....(((((((......))))))))))))))).))))))))))))))))))))))))))))))).

Structure
u                               a  c    auaua  aaca       ag 
 uaUAGCUAAGGAUUUGCAUUCUCaugauuga uu uagu     gu    uuauaga  a
 ||||||||||||||||||||||||||||||| || ||||     ||    |||||||   
 auaucgauuCCUAAACGUAAGAGUACUAACu aa auca     ca    aauaucu  a
u                               c  -    -----  ----       ga 


Annotation confidence Medium
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Genome context
chr1: 18686855-18686966 [-]

Database links

Mature ath-miR5663-5p

Accession MIMAT0022440
Description Arabidopsis thaliana ath-miR5663-5p mature miRNA
Sequence 4 - UAGCUAAGGAUUUGCAUUCUC - 24
Evidence experimental
Illumina [1]

Mature ath-miR5663-3p

Accession MIMAT0032129
Description Arabidopsis thaliana ath-miR5663-3p mature miRNA
Sequence 82 - CAAUCAUGAGAAUGCAAAUCC - 102
Evidence not_experimental

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176