miRBase entry: ath-MIR5645f

Stem-loop ath-MIR5645f


Accession
MI0019252
Description
Arabidopsis thaliana ath-MIR5645f precursor miRNA


Sequence

47916 reads, 316.0 reads per million, 183 experiments
cggaagacaaauaaaucguauaguuuuuguuguuuuucaaaauaaaugacaaaguuuuuguugaguugucAUUUGAGUCAUGUCGUUAAGuagguuaacagaauuuuuuuacggcguuaaugucucguuuaucuccuauguuagaacaaaacaacguucuucauugcagcucguuuugucuguugaaacaaauuuaaacccuaaaucccuaaaucgauuucauuaucugcgauuuugaggucaaugugggucucugauuuugagauaaugaaaucaauuugggaaauuaggguuuauauuuguuucaaaagacaaaacaacgucguuucgucucugcaauaaacgacguuguuuuguucuaacaaaguaaauaaacaagacauuaacgccguaaaaaaauuuuuuaacuuauuuaaugauaucucaaauggcaagucaacaaaaacuugucauuuAUUUCGAAAGUCAACAAAAACUUgucgauuuauuugucuucugu
((((((((((((((((((...(((((((((((.(((((.(((((((((((((.(((((((((((.((((((((((((..(((((((((((((((((((.((((((((((((((((((((((((((.((((((...((.((((((((((((((((((((.((.(((((((...(((((((((.(((((((((((.((((((((((...(((((((.(((((((((((((.(((..((((((((......)))))).))..)))))))))))))))).)))))))...)))))))))).))))))))))).))))))))).(((......)))..))))))).)).)))))))))))))))))))).))...)))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))).))))).)))))))))))...)))))))))))))))))).

Structure
-                  uau           u     a             a           g            UC                   c                          c      cuc  a                    c  c       ------------cuc         g           u          auc       c             g   uu  -      aa 
 cggaagacaaauaaaucg   aguuuuuguug uuuuc aaauaaaugacaa guuuuuguuga uugucAUUUGAG  AUGUCGUUAAGuagguuaa agaauuuuuuuacggcguuaaugucu guuuau   cu uguuagaacaaaacaacguu uu auugcag               guuuugucu uugaaacaaau uaaacccuaa   ccuaaau gauuucauuaucu cga  uu gagguc  u
 ||||||||||||||||||   ||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||   || |||||||||||||||||||| || |||||||               ||||||||| ||||||||||| ||||||||||   ||||||| ||||||||||||| |||  || ||||||   
 gucuucuguuuauuuagc   UCAAAAACAAC GAAAG UUUAuuuacuguu caaaaacaacu aacgguaaacuc  uauaguaauuuauucaauu uuuuaaaaaaaugccgcaauuacaga caaaua   ga acaaucuuguuuuguugcag aa uaacguc               caaaacaga aacuuuguuua auuugggauu   ggguuua cuaaaguaauaga guu  ag cucugg  g
u                  ugU           U     C             -           g            --                   -                          a      aau  a                    c  a       ucugcuuugcugcaa         a           u          aaa       a             -   uu  u      gu 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr5: 14946671-14947169 [-]

Database links

Mature ath-miR5645f-5p

Accession MIMAT0022441
Description Arabidopsis thaliana ath-miR5645f-5p mature miRNA
Sequence 71 - AUUUGAGUCAUGUCGUUAAG - 90
Evidence experimental
Illumina [1]

Mature ath-miR5645f-3p

Accession MIMAT0053965
Description Arabidopsis thaliana ath-miR5645f-3p mature miRNA
Sequence 456 - AUUUCGAAAGUCAACAAAAACUU - 478
Evidence experimental
unknown

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176