Stem-loop ath-MIR5664

Accession

MI0019253

Description

Arabidopsis thaliana ath-MIR5664 precursor miRNA

Sequence

uugucgucuaugaugaauAUAGUCAAUUUUAUCGGUCUGcaauaggcaaauaaaacaugcaauuacuuuggucacggacaaauuauuuuuauggcuauugagaccaucuuuaaguaauaaauaaaaaauacgauuauccacgaacaaaguaaucaucuguuuuauuugccuauuguagaccgauaaaagugacuauauauaucauagacgacau
.((((((((((((((.(((((((((.(((((((((((((((((((((((((((((((....(((((((((.((..(((.....(((((((((((((....)).))))................)))))))......)))..)).)))))))))....))))))))))))))))))))))))))))))).))))))))).)))))))))))))).

Structure

u              a         A                               ugca         g  ac   -caaau       ----------------    -  a 
 ugucgucuaugaug auAUAGUCA UUUUAUCGGUCUGcaauaggcaaauaaaaca    auuacuuug uc  gga      uauuuuu                augg cu u
 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    ||||||||| ||  |||      |||||||                |||| ||  
 acagcagauacuau uauaucagu aaaauagccagauguuauccguuuauuuugu    uaaugaaac ag  ccu      auaaaaa                uacc ga u
u              a         g                               cuac         a  ca   auuagc       auaaauaaugaauuuc    a  g 

Annotation confidence Not enough data

Genome context

chr1: 17386795-17387008 [+]

Mature ath-miR5664

• Accession: MIMAT0022442
• Description: Arabidopsis thaliana ath-miR5664 mature miRNA
• Sequence: 19 - AUAGUCAAUUUUAUCGGUCUG - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176