miRBase entry: ath-MIR5666

Stem-loop ath-MIR5666


Accession
MI0019255
Description
Arabidopsis thaliana ath-MIR5666 precursor miRNA


Sequence

1644 reads, 11.0 reads per million, 127 experiments
auuaaaugcucgauauuccauguugaaaccuuaucAGGUAAAAAUGAAGGACCUGACAaaguuucaccAUGGGACAUCGAGCAUUUAAU
((((((((((((((.(((((((.((((((.((.((((((...........)))))).)).)))))).))))))).))))))))))))))

Structure
              a       u      c  a      AAAA 
auuaaaugcucgau uuccaug ugaaac uu ucAGGU    A
|||||||||||||| ||||||| |||||| || ||||||    U
UAAUUUACGAGCUA AGGGUAc acuuug aA AGUCCA    G
              C       c      a  C      GGAA 


Annotation confidence Low
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Genome context
chr1: 12035047-12035135 [+]

Database links

Mature ath-miR5666-5p

Accession MIMAT0053968
Description Arabidopsis thaliana ath-miR5666-5p mature miRNA
Sequence 36 - AGGUAAAAAUGAAGGACCUGACA - 58
Evidence experimental
unknown

Mature ath-miR5666-3p

Accession MIMAT0022444
Description Arabidopsis thaliana ath-miR5666-3p mature miRNA
Sequence 69 - AUGGGACAUCGAGCAUUUAAU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176