Stem-loop ath-MIR5643b

Accession

MI0019256

Description

Arabidopsis thaliana ath-MIR5643b precursor miRNA MIR5643

Gene
family

RF03649; MIR5643

Sequence

26383 reads, 169.0 reads per million, 183 experiments

guguagccgaAGUCCGUAUGAGUCUUUGucuuuguauccucuaacaaggauauaauacuuAGGCUUUUAAGAUCUGGUUGCga
.((((((((..(((.....((((((..((..(((((((((......))))))))).))..))))))....))).)))))))).

Structure

g        aA   CGUAU      UU  cu         cu 
 uguagccg  GUC     GAGUCU  Gu  uuguauccu  a
 ||||||||  |||     ||||||  ||  |||||||||   
 gCGUUGGU  UAG     UUCGGA  ca  aauauagga  a
a        -C   -AAUU      uu  -u         ac 

Annotation confidence Medium

Genome context

chr5: 11757140-11757222 [-]

Mature ath-miR5643b-5p

• Accession: MIMAT0053969
• Description: Arabidopsis thaliana ath-miR5643b-5p mature miRNA
• Sequence: 11 - AGUCCGUAUGAGUCUUUG - 28
• Evidence: experimental ; unknown

Mature ath-miR5643b-3p

• Accession: MIMAT0022445
• Description: Arabidopsis thaliana ath-miR5643b-3p mature miRNA
• Sequence: 61 - AGGCUUUUAAGAUCUGGUUGC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176