miRBase entry: ath-MIR5645e

Stem-loop ath-MIR5645e


Accession
MI0019257
Description
Arabidopsis thaliana ath-MIR5645e precursor miRNA


Sequence

46532 reads, 277.0 reads per million, 184 experiments
uaaaugacaaaguuuauguugacuuuucAUUUGAGUCAUGUCGUUAAGuagguuaauauaauuauuucccggcguuaaguucucguuuaucuccucuauuagaacaaaacaacauuguuuauugcaucucguuuugucuguugaaacaaauuuaaacccuaaauccccaaaucgauuucauuaucugcgauuuugaggucagguggguuugugauuuugagauaaugaaaucgauauagggauuuaagguuuauauuuguuucaagagacAAAACGACGUCGUUUUGUgucuucaauaaacgacauuguuuguucuaacagaucaaauaaacaagucauuaaagccguaaaaaaaauuauauuaaccuauuuaacgauaggacucaaauggcaagucaacaaaaacuuugucauuua
(((((((((((((((.(((((((((.(((((((((((.(((((((((((((((((((((((((.(((..((((.((((...((.((((((....(((.((((((((((.(((...(((.....)))..(((((((((((.(((((((((((.((((((.((((((((...((((((((((((((((.......((((((((.(......).))))))))))))))))))))))))...)))))))).)))))).))))))))))).))))))))))).(((((((..((....))..))))))).))))))))))))).)))....)))))).))...)))).))))..)))..))))))))))))))))))))))))).))))))))))).))))))))).)))))))))))))))

Structure
               a         u           A                         -a   cc    g    guu  c      cucc   a          a   cauuguuuauugcaucucguuuugucuguugaaacaaauuuaaacccuaaauccccaaaucgauuucauuaucugcgauuuugaggucagguggguuugugauuuugagauaaugaaaucgauauagggauuuaagguuuauauuuguuucaagagacAAAACGAC       UG  u 
uaaaugacaaaguuu uguugacuu ucAUUUGAGUC UGUCGUUAAGuagguuaauauaauu  uuu  cggc uuaa   cu guuuau    ucu uuagaacaaa caa                                                                                                                                                                      GUCGUUU  Ug c
||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||  |||  |||| ||||   || ||||||    ||| |||||||||| |||                                                                                                                                                                      |||||||  ||  
auuuacuguuucaaa acaacugaa gguaaacucag auagcaauuuauccaauuauauuaa  aaa  gccg aauu   ga caaaua    aga aaucuuguuu guu                                                                                                                                                                      cagcaaa  ac u
               a         c           g                         aa   au    a    acu  a      aacu   c          -   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------a       ua  u 


Annotation confidence Low
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Genome context
chr4: 5321227-5321643 [+]

Database links

Mature ath-miR5645e-5p

Accession MIMAT0022446
Description Arabidopsis thaliana ath-miR5645e-5p mature miRNA
Sequence 29 - AUUUGAGUCAUGUCGUUAAG - 48
Evidence experimental
Illumina [1]

Mature ath-miR5645e-3p

Accession MIMAT0053970
Description Arabidopsis thaliana ath-miR5645e-3p mature miRNA
Sequence 271 - AAAACGACGUCGUUUUGU - 288
Evidence experimental
unknown

References

  1. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176