Stem-loop sly-MIR391

Accession

MI0019258

Description

Solanum lycopersicum sly-MIR391 precursor miRNA MIR4376

Gene
family

RF03636; MIR4376

Literature search

1 open access papers mention sly-MIR391
(4 sentences)

Sequence

185530 reads, 1605.0 reads per million, 80 experiments

aaggcuugcuACGCAGGAGAGAUGAUGCUGGAcgauagagaaaaugggauuuaauuuauuggcCAGCAUCAUACUCCUGCAUAuuaagccu
.(((((((.((.(((((((..((((((((((.(((((((..((((...))))..))))))).)))))))))).))))))).)).)))))))

Structure

a       c  C       AG          A       ga    g 
 aggcuug uA GCAGGAG  AUGAUGCUGG cgauaga  aaau  
 ||||||| || |||||||  |||||||||| |||||||  |||| g
 uccgaau AU CGUCCUC  UACUACGACc guuauuu  uuua  
-       u  A       -A          g       aa    g 

Annotation confidence Medium

Genome context

chr6: 4541880-4541970 [+]

Mature sly-miR391-5p

• Accession: MIMAT0022688
• Description: Solanum lycopersicum sly-miR391-5p mature miRNA
• Sequence: 11 - ACGCAGGAGAGAUGAUGCUGGA - 32
• Evidence: experimental ; cloned [1], Illumina [2]

Mature sly-miR391-3p

• Accession: MIMAT0055732
• Description: Solanum lycopersicum sly-miR391-3p mature miRNA
• Sequence: 64 - CAGCAUCAUACUCCUGCAUA - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 18653800
   Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
   "Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T"
   "Genome Res (2008) 18:1602-1609


2. PubMed ID: 18078843
   Small RNAs in tomato fruit and leaf development
   "Itaya A, Bundschuh R, Archual AJ, Joung JG, Fei Z, Dai X, Zhao PX, Tang Y, Nelson RS, Ding B"
   "Biochim Biophys Acta (2008) 1779:99-107


3. PubMed ID: 21917547
   Function and evolution of a MicroRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth
   "Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E, Olmstead R, Qi Y, Ding B"
   "Plant Cell (2011) 23:3185-3203