Stem-loop gma-MIR5667

Accession

MI0019261

Description

Glycine max gma-MIR5667 precursor miRNA

Literature search

1 open access papers mention gma-MIR5667
(1 sentences)

Sequence

8521 reads, 73.0 reads per million, 169 experiments

guuggaacagaggAAUCCAUUCAGAUCUGUUUCGCaacaccauauuggguucgacugaAACAGAUCUAAAUGGAUUCCUuaguucuga
.(((((((.((((((((((((.((((((((((((((((.(((...)))))).).).))))))))))).)))))))))))).)))))))

Structure

g       a            C           - - -   a   u 
 uuggaac gaggAAUCCAUU AGAUCUGUUUC G C aac cca  
 ||||||| |||||||||||| ||||||||||| | | ||| ||| a
 agucuug uUCCUUAGGUAA UCUAGACAAag c g uug ggu  
-       a            A           u a c   -   u 

Annotation confidence High

Genome context

chr7: 5379134-5379221 [-]

Mature gma-miR5667-5p

• Accession: MIMAT0032130
• Description: Glycine max gma-miR5667-5p mature miRNA
• Sequence: 14 - AAUCCAUUCAGAUCUGUUUCGC - 35
• Evidence: experimental ; Illumina [3]

Mature gma-miR5667-3p

• Accession: MIMAT0022449
• Description: Glycine max gma-miR5667-3p mature miRNA
• Sequence: 59 - AACAGAUCUAAAUGGAUUCCU - 79
• Evidence: experimental ; Illumina [1-2], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


3. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153