Stem-loop gma-MIR1512c

Accession

MI0019270

Description

Glycine max gma-MIR1512c precursor miRNA

Literature search

12 open access papers mention gma-MIR1512c
(27 sentences)

Sequence

54252 reads, 560.0 reads per million, 132 experiments

ucuugauaccUAACUGAACAUUCUUAGAGCAUcaccauuguaguucaacaucauaaugaugugaaaaaugggaaUGCUUUAAGAAUUUCAGUUAUgcaucaauc
..(((((.(.((((((((.(((((((((((((..(((((....((((.(((((...))))))))).)))))..))))))))))))))))))))).).)))))..

Structure

uc     a c        C             ca     guag    a     u 
  uugau c UAACUGAA AUUCUUAGAGCAU  ccauu    uuca cauca  
  ||||| | |||||||| |||||||||||||  |||||    |||| ||||| a
  aacua g AUUGACUU UAAGAAUUUCGUa  gguaa    aagu guagu  
cu     c U        -             ag     ---a    -     a 

Annotation confidence High

Genome context

chr2: 8698923-8699026 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR1512c

Mature gma-miR1512c-5p

• Accession: MIMAT0022458
• Description: Glycine max gma-miR1512c-5p mature miRNA
• Sequence: 11 - UAACUGAACAUUCUUAGAGCAU - 32
• Evidence: experimental ; Illumina [1-2], RT-PCR [1]

Mature gma-miR1512c-3p

• Accession: MIMAT0054271
• Description: Glycine max gma-miR1512c-3p mature miRNA
• Sequence: 75 - UGCUUUAAGAAUUUCAGUUAU - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553