Stem-loop gma-MIR5674a

Accession

MI0019271

Description

Glycine max gma-MIR5674a precursor miRNA

Literature search

2 open access papers mention gma-MIR5674a
(2 sentences)

Sequence

cacuuggguugaugguuuucaauacaauuucauuuaagaaguuaguugcuucuuucagcuuaccaacaaugaagccacacaaucaagaauuacaagugacaacauuaacaaaaaucccuuugacaaccauuuuaggaaaaaaaaaccauacaaguuuauguuuacauaaacagucaaUAAUUGUGUUGUACAUUAUCAcauuagaguc
.((((.((((((((((...((((((((((......(((((((.....)))))))...((((..........))))(((.................))).....................(((((..((......)).................(((((((....))))))).))))).))))))))))...))))))).))).)))).

Structure

c    g   -       uuu          ----------------------------------------------------------------------------------------------------------------------ucauuu       u 
 acuu ggu ugauggu   caauacaauu                                                                                                                            aagaagu a
 |||| ||| |||||||   ||||||||||                                                                                                                            ||||||| g
 ugag uua ACUAUUA   GUUGUGUUAA                                                                                                                            uucuucg u
c    a   c       CAU          Uaacugacaaauacauuuguauuugaacauaccaaaaaaaaaggauuuuaccaacaguuucccuaaaaacaauuacaacagugaacauuaagaacuaacacaccgaaguaacaaccauucgacu       u 

Annotation confidence Not enough data

Genome context

chr9: 39974819-39975026 [-]

Mature gma-miR5674a

• Accession: MIMAT0022459
• Description: Glycine max gma-miR5674a mature miRNA
• Sequence: 178 - UAAUUGUGUUGUACAUUAUCA - 198
• Evidence: experimental ; Illumina [1], RT-PCR [1]

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5