Stem-loop gma-MIR530b

Accession

MI0019275

Description

Glycine max gma-MIR530b precursor miRNA

Literature search

2 open access papers mention gma-MIR530b
(3 sentences)

Sequence

4910 reads, 85.0 reads per million, 148 experiments

cuuguauaucUGCAUUUGCACCUGCACUUUAauuugcuugguuucucuguaacauaaacaagagaaagugaggaugagaagaaauauuuuauguaggaguaaagugaccaagaacaaagguaAGGUGCAGGUGCCUCUGCAGaugaaugcc
...(((((((((((...((((((((((((((.((((((((((((((((((.......)).))))))..................((((((((......))))))))))))))..))))..))))))))))))))...)))))))..)))).

Structure

cuu    --       UUU              -a    --      ----------------------------------------      -  aa 
   guau  aucUGCA   GCACCUGCACUUUA  uuug  cuuggu                                        uucucu gu  c
   ||||  |||||||   ||||||||||||||  ||||  ||||||                                        |||||| ||  a
   cgua  uaGACGU   CGUGGACGUGGAau  aaac  gaacca                                        aagaga ca  u
--c    ag       CUC              gg    aa      gugaaaugaggauguauuuuauaaagaagaguaggaguga      a  aa 

Annotation confidence High

Genome context

chr13: 41761036-41761186 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR530b

Mature gma-miR530b-5p

• Accession: MIMAT0022463
• Description: Glycine max gma-miR530b-5p mature miRNA
• Sequence: 11 - UGCAUUUGCACCUGCACUUUA - 31
• Evidence: experimental ; Illumina [1-2], RT-PCR [1]

Mature gma-miR530b-3p

• Accession: MIMAT0054275
• Description: Glycine max gma-miR530b-3p mature miRNA
• Sequence: 123 - AGGUGCAGGUGCCUCUGCAG - 142
• Evidence: experimental ; unknown

References

1. PubMed ID: 21219599
   Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
   Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS
   BMC Plant Biol (2011) 11:5


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553