Stem-loop bra-MIR5711

Accession

MI0019320

Description

Brassica rapa bra-MIR5711 precursor miRNA

Sequence

auugauuacauacucgguaaaagccuucaaaauaugaguuaauauuuugaguaccacuccccaaaagccacaacauaacucaUGUUUUGUGGGUUUCUACCGAguaug
........(((((((((((.((((((.((((((((((((((...(((((.(........).))))).........)))))))))))))).)))))).)))))))))))

Structure

auugauua           a      u              ------aua     a uac 
        cauacucggua aagccu caaaauaugaguua         uuuug g   c
        ||||||||||| |||||| ||||||||||||||         ||||| |    
        guaugAGCCAU UUUGGG GUUUUGUacucaau         aaaac c   a
--------           C      U              acaacaccg     c cuc 

Annotation confidence Not enough data

Genome context

chrA4: 15753060-15753167 [-]

Mature bra-miR5711

• Accession: MIMAT0023006
• Description: Brassica rapa bra-miR5711 mature miRNA
• Sequence: 83 - UGUUUUGUGGGUUUCUACCGA - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038