Stem-loop bra-MIR5713

Accession

MI0019324

Description

Brassica rapa bra-MIR5713 precursor miRNA

Literature search

1 open access papers mention bra-MIR5713
(1 sentences)

Sequence

auaagcagaguuacucuaggcaauuaucuuccuccgauugaaauuugcagaccaguuggacuaccggagcuagguAGGCUUAGAAGAACGUUUGUUaaauuugcagaccaguuaugacugugauacccagucacagcggaaggguucuuaaggauucauaacuguuuugucaaggguucagaauguuuuuuuggggaaaugauaggguuuacaauggcaaaauuaggagagaugaugcauucaagcguuauuaccucuaaacucucuguucaaguaauccacaaaccgucucuuuccacuguuugcaucaguugguaacgguggcccgcucagacucgacugacccaucaauuuaacaaacguucuucuaagccuaccuagcuccgguaguccaacuggucugcaaauuucaaucggaggaagaucauuaccuagaguaacucugu
....((((((((((((((((.(((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((.((((((((((((((((.....)))))))(..(((....)))..)...))))))))).)))))...((((.(((...((((...((((.....((.(.(((((...............(((((((((((((......)))))))..........))))))...............))))).).))...((((((((..((.....))..))))))))))))...))))....)))))))...)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))).))))))))))))))))

Structure

auaa                c   u                                                                            ugcagaccaguuaugacugugauacccagucacagcggaaggguucuuaaggauucauaacuguuuugucaa    u   -aau    uuu    ---------------------------gaaau  u g     acaauggcaaaauua      ----------       au 
    gcagaguuacucuagg aau aucuuccuccgauugaaauuugcagaccaguuggacuaccggagcuagguAGGCUUAGAAGAACGUUUGUUaaauu                                                                        gggu cag    guuu   uggg                                ga a gguuu               ggagag          augaugc  u
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                                        |||| |||    ||||   ||||                                || | |||||               ||||||          |||||||   
    ugucucaaugagaucc uua uagaaggaggcuaacuuuaaacgucuggucaaccugauggccucgauccauccgaaucuucuugcaaacaauuuaa                                                                        ccca guc    caga   gccc                                cu u ccaaa               ucucuc          uauugcg  c
----                a   c                                                                            ---------------------------------------------------------------------cua    -   agcu    cuc    gguggcaaugguugacuacguuugucaccuuu  c g     caccuaaugaacuug      aaaucuccau       aa 

Annotation confidence Not enough data

Genome context

chrA9: 34116461-34116906 [+]

Mature bra-miR5713

• Accession: MIMAT0023010
• Description: Brassica rapa bra-miR5713 mature miRNA
• Sequence: 76 - AGGCUUAGAAGAACGUUUGUU - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038