Stem-loop bra-MIR1885b

Accession

MI0019329

Description

Brassica rapa bra-MIR1885b precursor miRNA

Literature search

6 open access papers mention bra-MIR1885b
(13 sentences)

Sequence

uugucucacaacuguauccauccugucuucacgagcuuccucuagaagaugugcgcagagucuuucuaagucacacucauaaaaaauucaaagaaaaggaaucauacuuucauugauaaugaaaucaauagagagaaugauacugagcucuuacauucgauuagaugcgauaaucuuauccucuaauugcuuguaagagcugaugaccaauggaucauccucuauugaucucuucaucaaugaaagguaugauucccuuucuuugaaaucacuuuugaaugugacuaagaaagccucuacgUACAUCUUCUCCGCGGAAGCUCaugaaaacaagguagaaccaauuguggacaaa
(((((.(((((.((..((.(((.(((.((((.((((((((.(.((((((((((((.((((.((((((.(((((((.(((.......((((((((((.((((((((((((((((((((...((.((((((((((............((((((((((..((((((((.(.((((....)))))))))))))..))))))))))(((((((...)).))))))))))))))).))...)))))))))).)))))))))).))))))))))........))).))))))).)))))).)))).))))))))))))..).)))))))).)))).))).))).))..)).)))))))))).

Structure

-     u     c  ua  c   c   c    c        u -u            c    u      a       c   -uaaaaaa          a          -          aau  a          ------agaaugauacug          uu        u c    a 
 uuguc cacaa ug  uc auc ugu uuca gagcuucc c  agaagaugugcg agag cuuucu agucaca uca        uucaaagaaa ggaaucauac uuucauugau   ga aucaauagag                  agcucuuaca  cgauuaga g gaua u
 ||||| ||||| ||  || ||| ||| |||| |||||||| |  |||||||||||| |||| |||||| ||||||| |||        |||||||||| |||||||||| ||||||||||   || ||||||||||                  ||||||||||  |||||||| | ||||  
 aacag guguu ac  ag ugg aca aagu CUCGAAGG G  UCUUCUACAUgc ucuc gaaaga ucagugu agu        aaguuucuuu ccuuaguaug aaaguaacua   cu uaguuaucuc                  ucgagaaugu  guuaaucu c cuau c
a     -     a  ca  a   a   a    a        C CC            a    c      a       a   uuucacua          c          g          cuu  c          cuacuagguaaccaguag          uc        - -    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature bra-miR1885b

• Accession: MIMAT0023015
• Description: Brassica rapa bra-miR1885b mature miRNA
• Sequence: 302 - UACAUCUUCUCCGCGGAAGCUC - 323
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22025521
   Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
   "Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y"
   "J Exp Bot (2012) 63:1025-1038