Stem-loop ola-mir-193a

Accession

MI0019413

Description

Oryzias latipes ola-mir-193a precursor miRNA

Sequence

9812 reads, 183.0 reads per million, 36 experiments

gaugauggugagugccagaggcUGGGUCUUUGCGGGCAAGGUGAguccuccauucauucAACUGGCCUACAAAGUCCCAGUuucugacucaugugacc
.......((((((..(((((((((((.(((((.((((.((.(((((.........))))).)).)))).))))).)))))))))))))))))......

Structure

gaugaug      gc           U     C    A  G     ccu 
       gugagu  cagaggcUGGG CUUUG GGGC AG UGAgu   c
       ||||||  ||||||||||| ||||| |||| || |||||   c
       uacuca  gucuuUGACCC GAAAC UCCG UC Acuua   a
-ccagug      --           U     A    G  A     cuu 

Annotation confidence High

Genome context

1: 11805716-11805813 [+]

Mature ola-miR-193a-5p

• Accession: MIMAT0057065
• Description: Oryzias latipes ola-miR-193a-5p mature miRNA
• Sequence: 23 - UGGGUCUUUGCGGGCAAGGUGA - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-193a-3p

• Accession: MIMAT0022528
• Description: Oryzias latipes ola-miR-193a-3p mature miRNA
• Sequence: 60 - AACUGGCCUACAAAGUCCCAGU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8