Stem-loop ola-mir-218a-1

Accession

MI0019414

Description

Oryzias latipes ola-mir-218a-1 precursor miRNA

Sequence

870644 reads, 5877.0 reads per million, 44 experiments

gucagucagcagguuguuccuUUGUGCUUGAUCUAACCAUGUggcugccagguuccuaaaaguggAACAUGGUUCUGUCAAGCACCAuggaacggcccggcaaau
........((.(((((((((...(((((((((..((((((((..((((.............)))).))))))))..)))))))))...)))))))))..))....

Structure

gucaguca  -a         uUU         CU        gg    caggu 
        gc  gguuguucc   GUGCUUGAU  AACCAUGU  cugc     u
        ||  |||||||||   |||||||||  ||||||||  ||||     c
        cg  ccggcaagg   CACGAACUG  UUGGUACA  ggug     c
----uaaa  gc         uAC         UC        -A    aaaau 

Annotation confidence High

Genome context

1: 17054065-17054169 [-]

Mature ola-miR-218a-5p

• Accession: MIMAT0022529
• Description: Oryzias latipes ola-miR-218a-5p mature miRNA
• Sequence: 22 - UUGUGCUUGAUCUAACCAUGU - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-218a-1-3p

• Accession: MIMAT0057066
• Description: Oryzias latipes ola-miR-218a-1-3p mature miRNA
• Sequence: 66 - AACAUGGUUCUGUCAAGCACCA - 87
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8