miRBase entry: ola-mir-221

Stem-loop ola-mir-221

Accession

MI0019415

Description

Oryzias latipes ola-mir-221 precursor miRNA

Sequence

ccguccaugaggaguucuggaccuggcauacaguguaguauucugugugcguccgucuacAGCUACAUUGUCUGCUGGGUUUCaggccuccacucaagucucg
..........((((.(((((((((((((.(((((((((....(((((.((....)).)))))))))))))).))))))).)))))).))))............

Structure

--ccguccauga    u      -       u         uauu     u  g 
            ggag ucugga ccuggca acaguguag    cugug gc u
            |||| |||||| ||||||| |||||||||    ||||| ||  
            ccuc ggaCUU GGGUCGU UGUUACAUC    GAcau ug c
gcucugaacuca    c      U       C         ----     c  c

Annotation confidence Not enough data

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Genome context

2: 28254368-28254470 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-221

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-221

Accession	MIMAT0022530
Description	Oryzias latipes ola-miR-221 mature miRNA
Sequence	61 - AGCUACAUUGUCUGCUGGGUUUC - 83
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8