Stem-loop ola-mir-221

Accession

MI0019415

Description

Oryzias latipes ola-mir-221 precursor miRNA

Literature search

1 open access papers mention ola-mir-221
(1 sentences)

Sequence

112332 reads, 1013.0 reads per million, 49 experiments

ccguccaugaggaguucuggACCUGGCAUACAGUGUAGUAUUCUGUgugcguccgucuacAGCUACAUUGUCUGCUGGGUUUCaggccuccacucaagucucg
..........((((.(((((((((((((.(((((((((....(((((.((....)).)))))))))))))).))))))).)))))).))))............

Structure

--ccguccauga    u      -       U         UAUU     u  g 
            ggag ucuggA CCUGGCA ACAGUGUAG    CUGUg gc u
            |||| |||||| ||||||| |||||||||    ||||| ||  
            ccuc ggaCUU GGGUCGU UGUUACAUC    GAcau ug c
gcucugaacuca    c      U       C         ----     c  c 

Annotation confidence High

Genome context

2: 28254368-28254470 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-221

Mature ola-miR-221-5p

• Accession: MIMAT0057068
• Description: Oryzias latipes ola-miR-221-5p mature miRNA
• Sequence: 21 - ACCUGGCAUACAGUGUAGUAUUCUGU - 46
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-221-3p

• Accession: MIMAT0022530
• Description: Oryzias latipes ola-miR-221-3p mature miRNA
• Sequence: 61 - AGCUACAUUGUCUGCUGGGUUUC - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8