miRBase entry: ola-mir-222

Stem-loop ola-mir-222

Accession

MI0019416

Description

Oryzias latipes ola-mir-222 precursor miRNA

Sequence

gggccccugggcgcccggcgcuugcucaguagucaguguagauccuguggggcugacagcAGCUACAUCUGGCUACUGGgucuccgccgacggcccgcacgagucc
((((.(.(((((...(((((...((((((((((((((((((...((((.......))))...))))).)))))))))))))...)))))...)))))...).))))

Structure

    c --c     gcc     cuu             -     auc    gg 
gggc c   ugggc   cggcg   gcucaguagucag uguag   cugu  g
|||| |   |||||   |||||   ||||||||||||| |||||   ||||  g
ccug g   gcccg   gccgc   ugGGUCAUCGGUC ACAUC   gaca  c
    a cac     gca     cuc             U     GAc    gu

Annotation confidence Not enough data

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Genome context

2: 28254507-28254612 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-222

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-222

Accession	MIMAT0022531
Description	Oryzias latipes ola-miR-222 mature miRNA
Sequence	61 - AGCUACAUCUGGCUACUGG - 79
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8