Stem-loop ola-mir-222

Accession

MI0019416

Description

Oryzias latipes ola-mir-222 precursor miRNA

Literature search

1 open access papers mention ola-mir-222
(1 sentences)

Sequence

709650 reads, 6681.0 reads per million, 49 experiments

gggccccugggcgcccggcgcuUGCUCAGUAGUCAGUGUAGAUCCuguggggcugacagcAGCUACAUCUGGCUACUGGGUCUCcgccgacggcccgcacgagucc
((((.(.(((((...(((((...((((((((((((((((((...((((.......))))...))))).)))))))))))))...)))))...)))))...).))))

Structure

    c --c     gcc     cuU             -     AUC    gg 
gggc c   ugggc   cggcg   GCUCAGUAGUCAG UGUAG   Cugu  g
|||| |   |||||   |||||   ||||||||||||| |||||   ||||  g
ccug g   gcccg   gccgc   UGGGUCAUCGGUC ACAUC   gaca  c
    a cac     gca     CUC             U     GAc    gu 

Annotation confidence High

Genome context

2: 28254507-28254612 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-222

Mature ola-miR-222-5p

• Accession: MIMAT0057069
• Description: Oryzias latipes ola-miR-222-5p mature miRNA
• Sequence: 23 - UGCUCAGUAGUCAGUGUAGAUCC - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-222-3p

• Accession: MIMAT0022531
• Description: Oryzias latipes ola-miR-222-3p mature miRNA
• Sequence: 61 - AGCUACAUCUGGCUACUGGGUCUC - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8