miRBase entry: ola-mir-92a-2

Stem-loop ola-mir-92a-2

Accession

MI0019419

Description

Oryzias latipes ola-mir-92a-2 precursor miRNA

Literature search

2 open access papers mention ola-mir-92a-2
(3 sentences)

Sequence

uggaagauguccuguccugugcagguggggauuaguagcaaugcuguucuccacgaggUAUUGCACUUGUCCCGGCCUGuaaaggaacggggagaugaagcug
.........(((((((((.(((((((.(((((.(((.((((((((...........))))))))))).))))).))))))).))).))))))...........

Structure

--uggaagaug      -   g       g     u   a        guuc 
           uccugu ccu ugcaggu gggau agu gcaaugcu    u
           |||||| ||| ||||||| ||||| ||| ||||||||    c
           ggggca gga auGUCCG CCCUG UCA CGUUAUgg    c
gucgaaguaga      a   a       G     U   -        agca

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

3: 15108084-15108186 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-92a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-92a

Accession	MIMAT0022534
Description	Oryzias latipes ola-miR-92a mature miRNA
Sequence	59 - UAUUGCACUUGUCCCGGCCUG - 79
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8