Stem-loop ola-mir-92a-2

Accession

MI0019419

Description

Oryzias latipes ola-mir-92a-2 precursor miRNA

Literature search

2 open access papers mention ola-mir-92a-2
(3 sentences)

Sequence

3304928 reads, 39582.0 reads per million, 49 experiments

uggaagauguccuguccugugcAGGUGGGGAUUAGUAGCAAUGCUguucuccacgaggUAUUGCACUUGUCCCGGCCUGuaaaggaacggggagaugaagcug
.........(((((((((.(((((((.(((((.(((.((((((((...........))))))))))).))))).))))))).))).))))))...........

Structure

--uggaagaug      -   g       G     U   A        guuc 
           uccugu ccu ugcAGGU GGGAU AGU GCAAUGCU    u
           |||||| ||| ||||||| ||||| ||| ||||||||    c
           ggggca gga auGUCCG CCCUG UCA CGUUAUgg    c
gucgaaguaga      a   a       G     U   -        agca 

Annotation confidence High

Genome context

3: 15108084-15108186 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-92a-2

Mature ola-miR-92a-2-5p

• Accession: MIMAT0057073
• Description: Oryzias latipes ola-miR-92a-2-5p mature miRNA
• Sequence: 23 - AGGUGGGGAUUAGUAGCAAUGCU - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-92a-3p

• Accession: MIMAT0022534
• Description: Oryzias latipes ola-miR-92a-3p mature miRNA
• Sequence: 59 - UAUUGCACUUGUCCCGGCCUG - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8