Stem-loop ola-mir-27b

Accession

MI0019425

Description

Oryzias latipes ola-mir-27b precursor miRNA

Literature search

1 open access papers mention ola-mir-27b
(1 sentences)

Sequence

821670 reads, 7387.0 reads per million, 48 experiments

gcucucucgcuaaaggcacAGAGCUUAGCUAAUUGGUGAGCAuugaucccugcuguguguugUUCACAGUGGCUAAGUUCAGUgccggaggugaaaugauu
......(((((...(((((.(((((((((((....(((((((..................)))))))..))))))))))).)))))...))))).......

Structure

-gcucuc     aaa     A           AUUG       uugauccc 
       ucgcu   ggcac GAGCUUAGCUA    GUGAGCA        u
       |||||   ||||| |||||||||||    |||||||         
       agugg   ccgUG CUUGAAUCGGU    CACUUgu        g
uuaguaa     agg     A           --GA       uguguguc 

Annotation confidence High

Genome context

4: 34610548-34610648 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-27b

Mature ola-miR-27b-5p

• Accession: MIMAT0022544
• Description: Oryzias latipes ola-miR-27b-5p mature miRNA
• Sequence: 20 - AGAGCUUAGCUAAUUGGUGAGCA - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-27b-3p

• Accession: MIMAT0057076
• Description: Oryzias latipes ola-miR-27b-3p mature miRNA
• Sequence: 63 - UUCACAGUGGCUAAGUUCAGU - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8