Stem-loop ola-mir-24a-1

Accession

MI0019426

Description

Oryzias latipes ola-mir-24a-1 precursor miRNA

Sequence

702107 reads, 4891.0 reads per million, 49 experiments

agacuuggggcugcacccucccgUGCCUACUGAACUGGUAUCAGUguuugaccugaaaacUGGCUCAGUUCAGCAGGAACAGgaguggagcccacugaccu
.......(((((.(((..(((.((.(((.(((((((((..(((((.(((......)))))))).))))))))).))).)).)))))).)))))........

Structure

-agacuug     g   cc   c  G   A         UA     g   ga 
        gggcu cac  ucc gU CCU CUGAACUGG  UCAGU uuu  c
        ||||| |||  ||| || ||| |||||||||  ||||| |||   
        cccga gug  agG CA GGA GACUUGACU  GGUca aaa  c
uccaguca     g   --   A  A   C         -C     -   gu 

Annotation confidence High

Genome context

4: 34612920-34613020 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-24a-1

Mature ola-miR-24a-1-5p

• Accession: MIMAT0057077
• Description: Oryzias latipes ola-miR-24a-1-5p mature miRNA
• Sequence: 24 - UGCCUACUGAACUGGUAUCAGU - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-24a-3p

• Accession: MIMAT0022545
• Description: Oryzias latipes ola-miR-24a-3p mature miRNA
• Sequence: 61 - UGGCUCAGUUCAGCAGGAACAG - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8