Stem-loop ola-mir-135a-1

Accession

MI0019428

Description

Oryzias latipes ola-mir-135a-1 precursor miRNA

Sequence

625873 reads, 4016.0 reads per million, 47 experiments

ugugacugauucacugcugugucuUAUGGCUUUCUAUUCCUAUGUGAuuuuucucuggcaugucACAUAGGGUCUAAAGCCAUUGGgugcagagugggagaucug
.......((((..(((((.((((((((((((((....(((((((((((.............)))))))))))...))))))).)))).))).)))))..))))..

Structure

ugugacu    ca     g   -    -       CUAU           uuuuc 
       gauu  cugcu ugu cuUA UGGCUUU    UCCUAUGUGAu     u
       ||||  ||||| ||| |||| |||||||    |||||||||||     c
       cuag  gguga acg gGGU ACCGAAA    GGGAUACAcug     u
-----gu    ag     g   u    U       -UCU           uacgg 

Annotation confidence High

Genome context

5: 24516531-24516635 [-]

Mature ola-miR-135a-5p

• Accession: MIMAT0022547
• Description: Oryzias latipes ola-miR-135a-5p mature miRNA
• Sequence: 25 - UAUGGCUUUCUAUUCCUAUGUGA - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-135a-1-3p

• Accession: MIMAT0057082
• Description: Oryzias latipes ola-miR-135a-1-3p mature miRNA
• Sequence: 65 - ACAUAGGGUCUAAAGCCAUUGG - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8