Stem-loop ola-mir-499

Accession

MI0019429

Description

Oryzias latipes ola-mir-499 precursor miRNA

Literature search

3 open access papers mention ola-mir-499
(121 sentences)

Sequence

1028801 reads, 5657.0 reads per million, 49 experiments

ggacagcuggggcugagacagUUAAGACUUGCAGUGAUGUUUAgggcaaugaugacaugAACAUCACUUUAAGUCUGUGCugacucuucucuuuuuc
........((((..(((.((((..(((((((.(((((((((((...((....))...))))))))))).)))))))..)))).)))..)))).....

Structure

ggacagcu    cu   a    UA       C           ggg  a 
        gggg  gag cagU  AGACUUG AGUGAUGUUUA   ca u
        ||||  ||| ||||  ||||||| |||||||||||   ||  
        ucuc  cuc guCG  UCUGAAU UCACUACAAgu   gu g
---cuuuu    uu   a    UG       U           aca  a 

Annotation confidence High

Genome context

5: 26842783-26842879 [-]

Mature ola-miR-499-5p

• Accession: MIMAT0057084
• Description: Oryzias latipes ola-miR-499-5p mature miRNA
• Sequence: 22 - UUAAGACUUGCAGUGAUGUUUA - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-499-3p

• Accession: MIMAT0022548
• Description: Oryzias latipes ola-miR-499-3p mature miRNA
• Sequence: 60 - AACAUCACUUUAAGUCUGUGC - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8