Stem-loop ola-mir-138

Accession

MI0019435

Description

Oryzias latipes ola-mir-138 precursor miRNA

Literature search

1 open access papers mention ola-mir-138
(1 sentences)

Sequence

324050 reads, 1556.0 reads per million, 40 experiments

gguguguguguugcAGCUGGUGUUGUGAAUCAGGCCgaugacacacaccuccuaaaagccgGCUAUUUCACAACACCAGGGUggcaccgcaucacu
((((((.(((((((..(((((((((((((...(((((......................)))))..))))))))))))).)))))))))))))...

Structure

---      u       AG             UCA     augacacaca 
   ggugug guguugc  CUGGUGUUGUGAA   GGCCg          c
   |||||| |||||||  |||||||||||||   |||||           
   cuacgc cacggUG  GACCACAACACUU   UCGgc          c
uca      -       -G             -UA     cgaaaauccu 

Annotation confidence High

Genome context

6: 23333297-23333392 [+]

Mature ola-miR-138-5p

• Accession: MIMAT0022554
• Description: Oryzias latipes ola-miR-138-5p mature miRNA
• Sequence: 15 - AGCUGGUGUUGUGAAUCAGGCC - 36
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-138-3p

• Accession: MIMAT0057088
• Description: Oryzias latipes ola-miR-138-3p mature miRNA
• Sequence: 62 - GCUAUUUCACAACACCAGGGU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8