Stem-loop ola-mir-183-1

Accession

MI0019436

Description

Oryzias latipes ola-mir-183-1 precursor miRNA

Literature search

1 open access papers mention ola-mir-183-1
(2 sentences)

Sequence

448790 reads, 2229.0 reads per million, 49 experiments

auccacaauuccuccuauucugugUAUGGCACUGGUAGAAUUCACUGucacagcacucuaucAGUGAAUUACCAUAGGGCCAUAaacagaguagagacagaaccucagu
........(((.(((((((((((.((((((..(((((..((((((((..............)))))))))))))....)))))).))))))))).))..))).......

Structure

auccacaa   -c  -         g      --AC     GA        ucacag 
        uuc  uc cuauucugu UAUGGC    UGGUA  AUUCACUG      c
        |||  || ||||||||| ||||||    |||||  ||||||||       
        aag  ag gaugagaca AUACCG    ACCAU  UAAGUGAc      a
-ugacucc   ac  a         a      GGAU     --        uaucuc 

Annotation confidence High

Genome context

6: 16407646-16407754 [-]

Mature ola-miR-183-5p

• Accession: MIMAT0022555
• Description: Oryzias latipes ola-miR-183-5p mature miRNA
• Sequence: 25 - UAUGGCACUGGUAGAAUUCACUG - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-183-3p

• Accession: MIMAT0022556
• Description: Oryzias latipes ola-miR-183-3p mature miRNA
• Sequence: 63 - AGUGAAUUACCAUAGGGCCAUA - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8