Stem-loop ola-mir-133-2

Accession

MI0019438

Description

Oryzias latipes ola-mir-133-2 precursor miRNA

Literature search

2 open access papers mention ola-mir-133-2
(2 sentences)

Sequence

3183048 reads, 16077.0 reads per million, 41 experiments

uucaccccuaaaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAucaacuguucaauggauUUGGUCCCCUUCAACCAGCUGUagcugugcauugaucacugcaa
...........(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))...........

Structure

uucaccccuaa     uuu    a       AA  U  A        aacug 
           aaugc   gcua AGCUGGU  AA GG ACCAAAuc     u
           |||||   |||| |||||||  || || ||||||||      
           uuacg   cgaU UCGACCA  UU CC UGGUUuag     u
aacgucacuag     ugu    G       AC  C  C        guaac 

Annotation confidence High

Genome context

7: 5284126-5284231 [+]

Mature ola-miR-133-5p

• Accession: MIMAT0022559
• Description: Oryzias latipes ola-miR-133-5p mature miRNA
• Sequence: 25 - AGCUGGUAAAAUGGAACCAAA - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-133-3p

• Accession: MIMAT0022560
• Description: Oryzias latipes ola-miR-133-3p mature miRNA
• Sequence: 63 - UUGGUCCCCUUCAACCAGCUGU - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8