Stem-loop ola-mir-462

Accession

MI0019439

Description

Oryzias latipes ola-mir-462 precursor miRNA

Literature search

1 open access papers mention ola-mir-462
(2 sentences)

Sequence

156768 reads, 2126.0 reads per million, 49 experiments

gauugUAACGGAACCCAUAAUGCAGCUGuaauaauaugucccaGCUGGUUAUGGGGUCCGUUUCCauc
(((.(.((((((.((((((((.((((((..(((...)))..)))))))))))))).)))))).).)))

Structure

   u U      A        G      ua   a 
gau g AACGGA CCCAUAAU CAGCUG  aua  
||| | |||||| |||||||| ||||||  ||| u
cua C UUGCCU GGGUAUUG GUCGac  ugu  
   C U      G        -      cc   a 

Annotation confidence High

Genome context

7: 6519353-6519420 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-462

Mature ola-miR-462-5p

• Accession: MIMAT0022561
• Description: Oryzias latipes ola-miR-462-5p mature miRNA
• Sequence: 6 - UAACGGAACCCAUAAUGCAGCUG - 28
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-462-3p

• Accession: MIMAT0057089
• Description: Oryzias latipes ola-miR-462-3p mature miRNA
• Sequence: 44 - GCUGGUUAUGGGGUCCGUUUCC - 65
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8