Stem-loop ola-mir-731

Accession

MI0019440

Description

Oryzias latipes ola-mir-731 precursor miRNA

Sequence

50403 reads, 1042.0 reads per million, 45 experiments

uucuugguguuuuuccucAAUGACACGUUUUCUCCCGGAUUGCuggcaaaugaaagcgcAACCGGGAAUUCCGUGUCAGCCAagaauaacgccagcaa
...((((((((.(((.....(((((((.....((((((.((((..((........))))))))))))....))))))).....))).))))))))...

Structure

uuc        u   cucAA       UUUUC      A    ug  aaa 
   uugguguu uuc     UGACACG     UCCCGG UUGC  gc   u
   |||||||| |||     |||||||     |||||| ||||  ||    
   gaccgcaa aag     ACUGUGC     AGGGCC AAcg  cg   g
aac        u   aACCG       -CUUA      -    --  aaa 

Annotation confidence High

Genome context

7: 6519816-6519913 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-731

Mature ola-miR-731-5p

• Accession: MIMAT0022562
• Description: Oryzias latipes ola-miR-731-5p mature miRNA
• Sequence: 19 - AAUGACACGUUUUCUCCCGGAUUGC - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-731-3p

• Accession: MIMAT0057090
• Description: Oryzias latipes ola-miR-731-3p mature miRNA
• Sequence: 60 - AACCGGGAAUUCCGUGUCAGCCA - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8