miRBase entry: ola-mir-731

Stem-loop ola-mir-731

Accession

MI0019440

Description

Oryzias latipes ola-mir-731 precursor miRNA

Sequence

uucuugguguuuuuccucAAUGACACGUUUUCUCCCggauugcuggcaaaugaaagcgcaaccgggaauuccgugucagccaagaauaacgccagcaa
...((((((((.(((.....(((((((.....((((((.((((..((........))))))))))))....))))))).....))).))))))))...

Structure

uuc        u   cucAA       UUUUC      a    ug  aaa 
   uugguguu uuc     UGACACG     UCCCgg uugc  gc   u
   |||||||| |||     |||||||     |||||| ||||  ||    
   gaccgcaa aag     acugugc     agggcc aacg  cg   g
aac        u   aaccg       -cuua      -    --  aaa

Annotation confidence Not enough data

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Genome context

7: 6519816-6519913 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-731

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-731

Accession	MIMAT0022562
Description	Oryzias latipes ola-miR-731 mature miRNA
Sequence	19 - AAUGACACGUUUUCUCCC - 36
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8