Stem-loop ola-mir-196a

Accession

MI0019442

Description

Oryzias latipes ola-mir-196a precursor miRNA

Literature search

3 open access papers mention ola-mir-196a
(10 sentences)

Sequence

278324 reads, 2961.0 reads per million, 44 experiments

uugcgcgaagcuggagcgugguuUAGGUAGUUUCAUGUUGUUGGGguuggcuuccUGGCUCGGCAACAAGAAACUGCcuugauuacgucaguucgucuucaucaa
....(((((.(((..((((((((.((((((((((.((((((((((.(.((...)).).)))))))))).)))))))))).)))))))))))))))).........

Structure

-----uugc     g   ga        U          A          g u  c 
         gcgaa cug  gcgugguu AGGUAGUUUC UGUUGUUGGG u gg  
         ||||| |||  |||||||| |||||||||| |||||||||| | || u
         ugcuu gac  ugcauuag ucCGUCAAAG ACAACGGCUC G cc  
aacuacuuc     -   --        u          A          G U  u 

Annotation confidence Medium

Genome context

7: 12869858-12869962 [+]

Mature ola-miR-196a-5p

• Accession: MIMAT0022564
• Description: Oryzias latipes ola-miR-196a-5p mature miRNA
• Sequence: 24 - UAGGUAGUUUCAUGUUGUUGGG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-196a-3p

• Accession: MIMAT0057092
• Description: Oryzias latipes ola-miR-196a-3p mature miRNA
• Sequence: 56 - UGGCUCGGCAACAAGAAACUGC - 77
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8