Stem-loop ola-mir-1388

Accession

MI0019445

Description

Oryzias latipes ola-mir-1388 precursor miRNA

Sequence

56207 reads, 930.0 reads per million, 40 experiments

uuuuuaaguacugaguggugcuuucuAGGACUGUCCAACCUGAGAAUGuugguuuaaggcucaAUCUCAGGUUCGUCAGCCCAUGaaacgccaacucgcuucugcaga
............((((((((.((((..((.(((.(.(((((((((.((..((((...)))))).))))))))).).))).))..)))))))).))))((....))...

Structure

uuuuuaaguacu    -    c    uA  A   U C         A  uu    u 
            gagu ggug uuuc  GG CUG C AACCUGAGA UG  gguu  
            |||| |||| ||||  || ||| | ||||||||| ||  |||| a
            cuca ccgc aaaG  CC GAC G UUGGACUCU ac  ucgg  
-agacgucuucg    a    -    UA  C   U C         A  --    a 

Annotation confidence High

Genome context

7: 15988885-15988992 [+]

Mature ola-miR-1388-5p

• Accession: MIMAT0022567
• Description: Oryzias latipes ola-miR-1388-5p mature miRNA
• Sequence: 27 - AGGACUGUCCAACCUGAGAAUG - 48
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-1388-3p

• Accession: MIMAT0022568
• Description: Oryzias latipes ola-miR-1388-3p mature miRNA
• Sequence: 64 - AUCUCAGGUUCGUCAGCCCAUG - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8