Stem-loop ola-mir-29b-1

Accession

MI0019446

Description

Oryzias latipes ola-mir-29b-1 precursor miRNA

Literature search

2 open access papers mention ola-mir-29b-1
(16 sentences)

Sequence

47104 reads, 624.0 reads per million, 47 experiments

ucagacgugcccuccuuggaaGCUGGUUUCAGAUGGUGGCUUAGagugcugucaucuaucUAGCACCAUUUGAAAUCAGUGUucuuggggugggaagugugg
.((.((.(.((((((..(((.(((((((((((((((((.((.(((..(.......)..)))))))))))))))))))))).)))..)))).)).).)).)).

Structure

u  g  g g  -    uu   a                 G  U   gu cu 
 ca ac u cc cucc  gga GCUGGUUUCAGAUGGUG CU AGa  g  g
 || || | || ||||  ||| ||||||||||||||||| || |||  |  u
 gu ug a gg gggg  cuU UGACUAAAGUUUACCAC GA Ucu  c  c
g  g  a g  u    uu   G                 -  -   au ua 

Annotation confidence High

Genome context

7: 23588373-23588474 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-29b-1

Mature ola-miR-29b-1-5p

• Accession: MIMAT0057094
• Description: Oryzias latipes ola-miR-29b-1-5p mature miRNA
• Sequence: 22 - GCUGGUUUCAGAUGGUGGCUUAG - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-29b-3p

• Accession: MIMAT0022569
• Description: Oryzias latipes ola-miR-29b-3p mature miRNA
• Sequence: 61 - UAGCACCAUUUGAAAUCAGUGU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8