Stem-loop ola-mir-29a

Accession

MI0019447

Description

Oryzias latipes ola-mir-29a precursor miRNA

Literature search

3 open access papers mention ola-mir-29a
(21 sentences)

Sequence

95998 reads, 995.0 reads per million, 49 experiments

guccucuuuccaagguugaCCGAUUUCUUUUGGUGUUCAGAguccguucuguuucUAGCACCAUUUGAAAUCGGUUAcagugaaggacagau
(((((.....((..((.((((((((((...(((((((((((......)))).....)))))))...))))))))))))..)).)))))....

Structure

----     cuuuc  ag  u          UUU       -----    gu 
    guccu     ca  gu gaCCGAUUUC   UGGUGUU     CAGA  c
    |||||     ||  || ||||||||||   |||||||     ||||   
    cagga     gu  cA UUGGCUAAAG   ACCACGA     gucu  c
uaga     ----a  ga  -          UUU       Ucuuu    ug 

Annotation confidence Medium

Genome context

7: 23588631-23588722 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-29a

Mature ola-miR-29a-5p

• Accession: MIMAT0057096
• Description: Oryzias latipes ola-miR-29a-5p mature miRNA
• Sequence: 20 - CCGAUUUCUUUUGGUGUUCAGA - 41
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-29a-3p

• Accession: MIMAT0022570
• Description: Oryzias latipes ola-miR-29a-3p mature miRNA
• Sequence: 56 - UAGCACCAUUUGAAAUCGGUUA - 77
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8