Stem-loop ola-mir-135a-2

Accession

MI0019451

Description

Oryzias latipes ola-mir-135a-2 precursor miRNA

Sequence

624911 reads, 4605.0 reads per million, 41 experiments

uaauaaaccacacaugcaucuUAUGGCUUUCUAUUCCUAUGUGAguucuaaacacaucAUGUAGGGUUUAAAGCCAUCGGauacacaguggacgauca
.......((((...((.((((.((((((((....((((((((((((.......)).))))))))))...)))))))).)))).))..)))).......

Structure

uaauaaa    aca  c    U        CUAU          -  uc 
       ccac   ug aucu AUGGCUUU    UCCUAUGUGA gu  u
       ||||   || |||| ||||||||    |||||||||| ||  a
       ggug   ac uaGG UACCGAAA    GGGAUGUAcu ca  a
acuagca    -ac  a    C        -UUU          a  ca 

Annotation confidence High

Genome context

7: 20955695-20955792 [-]

Mature ola-miR-135a-5p

• Accession: MIMAT0022547
• Description: Oryzias latipes ola-miR-135a-5p mature miRNA
• Sequence: 22 - UAUGGCUUUCUAUUCCUAUGUGA - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-135a-2-3p

• Accession: MIMAT0057083
• Description: Oryzias latipes ola-miR-135a-2-3p mature miRNA
• Sequence: 59 - AUGUAGGGUUUAAAGCCAUCGG - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8