Stem-loop ola-mir-205

Accession

MI0019453

Description

Oryzias latipes ola-mir-205 precursor miRNA

Literature search

2 open access papers mention ola-mir-205
(6 sentences)

Sequence

529560 reads, 3278.0 reads per million, 44 experiments

auguuuucugUCCUUCAUUCCACCGGAGUCUGugccuguauggaaccAGAUUUCAGUGGUGUGAAGUGUaaaagacaug
(((((((.((.(((((((.((((.((((((((..((.....))...)))))))).)))).)))))).))).))))))).

Structure

-       c  U -      U    C        -ug  u 
 auguuuu ug C CUUCAU CCAC GGAGUCUG   cc g
 ||||||| || | |||||| |||| ||||||||   || u
 uacagaa aU G GAAGUG GGUG CUUUAGAc   gg a
g       a  - U      U    A        caa  u 

Annotation confidence High

Genome context

7: 22980091-22980169 [-]

Mature ola-miR-205-5p

• Accession: MIMAT0057100
• Description: Oryzias latipes ola-miR-205-5p mature miRNA
• Sequence: 11 - UCCUUCAUUCCACCGGAGUCUG - 32
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-205-3p

• Accession: MIMAT0022574
• Description: Oryzias latipes ola-miR-205-3p mature miRNA
• Sequence: 48 - AGAUUUCAGUGGUGUGAAGUGU - 69
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8