Stem-loop ola-mir-33

Accession

MI0019456

Description

Oryzias latipes ola-mir-33 precursor miRNA

Literature search

1 open access papers mention ola-mir-33
(2 sentences)

Sequence

37803 reads, 748.0 reads per million, 35 experiments

cggccagagcugcaGUGCAUUGUAGUUGCAUUGCAuguauguuucucaaagugCAAUGUACCUGCAGUGCAACAcagagcuggaccacaaacug
.((((((..(((...((((((((((.((((((((((...((.....))..)))))))))).))))))))))...)))..)))).))........

Structure

-------c  -    ag   caG          U          gua  u 
        gg ccag  cug   UGCAUUGUAG UGCAUUGCAu   ug u
        || ||||  |||   |||||||||| ||||||||||   || u
        cc gguc  gac   ACGUGACGUC AUGUAACgug   ac c
gucaaaca  a    ga   ACA          C          -aa  u 

Annotation confidence High

Genome context

8: 12694467-12694560 [+]

Mature ola-miR-33-5p

• Accession: MIMAT0057104
• Description: Oryzias latipes ola-miR-33-5p mature miRNA
• Sequence: 15 - GUGCAUUGUAGUUGCAUUGCA - 35
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-33-3p

• Accession: MIMAT0022576
• Description: Oryzias latipes ola-miR-33-3p mature miRNA
• Sequence: 54 - CAAUGUACCUGCAGUGCAACA - 74
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8