Stem-loop ola-mir-137

Accession

MI0019457

Description

Oryzias latipes ola-mir-137 precursor miRNA

Sequence

36242 reads, 267.0 reads per million, 38 experiments

cacuugcucccgucucgacCACGGGUAUUCUUGGGUUGAUaauacagaugucgauguuaUUGCUUGAGAAUACGCGUAGCUgagcggaagccauug
.....(((.(((.((((.(.(((.((((((((((((.(((((((..(....)..))))))))))))))))))).))).).))))))).))).....

Structure

cacuu   c   u    a C   G            U       ca a 
     gcu ccg cucg c ACG GUAUUCUUGGGU GAUaaua  g u
     ||| ||| |||| | ||| |||||||||||| |||||||  |  
     cga ggc gagU G UGC CAUAAGAGUUCG UUauugu  c g
guuac   a   -    C A   G            -       ag u 

Annotation confidence High

Genome context

8: 22468612-22468707 [+]

Mature ola-miR-137-5p

• Accession: MIMAT0057105
• Description: Oryzias latipes ola-miR-137-5p mature miRNA
• Sequence: 20 - CACGGGUAUUCUUGGGUUGAU - 40
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-137-3p

• Accession: MIMAT0022577
• Description: Oryzias latipes ola-miR-137-3p mature miRNA
• Sequence: 60 - UUGCUUGAGAAUACGCGUAGCU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8