Stem-loop ola-mir-152

Accession

MI0019458

Description

Oryzias latipes ola-mir-152 precursor miRNA

Literature search

1 open access papers mention ola-mir-152
(2 sentences)

Sequence

4156 reads, 402.0 reads per million, 45 experiments

auuggugcugagguucuggucaAAGUUCUGUGAUACACUCAGAcugugaauguuugcuggUCAGUGCAUAACAGAACUUUGUCccggcucggaaacuuugu
...(((.(((((.(...((.(((((((((((.((.((((..((((((((....)))).)))))))).)).))))))))))).)).).)))))..)))....

Structure

-auu   -g     g ucu  u           G  A    CA    -    a 
    ggu  cugag u   gg caAAGUUCUGU AU CACU  GAcu guga u
    |||  ||||| |   || ||||||||||| || ||||  |||| ||||  
    uca  ggcuc g   cC GUUUCAAGACA UA GUGA  CUgg cguu g
uguu   aa     g --c  U           A  C    --    u    u 

Annotation confidence High

Genome context

8: 24625017-24625117 [+]

Mature ola-miR-152-5p

• Accession: MIMAT0057106
• Description: Oryzias latipes ola-miR-152-5p mature miRNA
• Sequence: 23 - AAGUUCUGUGAUACACUCAGA - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-152-3p

• Accession: MIMAT0022578
• Description: Oryzias latipes ola-miR-152-3p mature miRNA
• Sequence: 61 - UCAGUGCAUAACAGAACUUUGUC - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8