Stem-loop ola-mir-27c

Accession

MI0019461

Description

Oryzias latipes ola-mir-27c precursor miRNA

Literature search

2 open access papers mention ola-mir-27c
(2 sentences)

Sequence

224420 reads, 3117.0 reads per million, 49 experiments

auucuagccuggcugugcggcagCAGGACUUAGCCCACAUGUGAACAgugaguguaugccaugUUCACAGUGGUUAAGUUCUGCCgccacagggcugcagccagcau
......((.((((((((((((.(((((((((((((.((.((((((((.((.((....))))))))))))))))))))))))))).))).....)).)))))))))..

Structure

auucua  c       -  -----   a             C  A        g  a  g 
      gc uggcugu gc     ggc gCAGGACUUAGCC AC UGUGAACA ug gu u
      || ||||||| ||     ||| ||||||||||||| || |||||||| || ||  
      cg accgacg cg     ccg CGUCUUGAAUUGG UG ACACUUgu ac cg a
----ua  -       u  ggaca   C             -  -        -  -  u 

Annotation confidence High

Genome context

8: 13688175-13688281 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-27c

Mature ola-miR-27c-5p

• Accession: MIMAT0022581
• Description: Oryzias latipes ola-miR-27c-5p mature miRNA
• Sequence: 24 - CAGGACUUAGCCCACAUGUGAACA - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-27c-3p

• Accession: MIMAT0022582
• Description: Oryzias latipes ola-miR-27c-3p mature miRNA
• Sequence: 64 - UUCACAGUGGUUAAGUUCUGCC - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8