Stem-loop ola-mir-23a-1

Accession

MI0019462

Description

Oryzias latipes ola-mir-23a-1 precursor miRNA

Sequence

755619 reads, 7551.0 reads per million, 49 experiments

auuugagucugucggccaggGGAAUUCCUGGCAGAGUGAUUUuugagacuacaggacugaAUCACAUUGCCAGGGAUUUCCAauggcugccaugaau
.......((((.((((((.(((((((((((((((.(((((((................))))))).)))))))))))))))..)))))).)).))..

Structure

auuugag  -  u      -g               A       uugagac 
       uc ug cggcca  gGGAAUUCCUGGCAG GUGAUUU       u
       || || ||||||  ||||||||||||||| |||||||        
       ag ac gucggu  CCUUUAGGGACCGUU CACUAag       a
-----ua  u  c      aA               A       ucaggac 

Annotation confidence High

Genome context

8: 13688406-13688502 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-23a-1

Mature ola-miR-23a-1-5p

• Accession: MIMAT0057107
• Description: Oryzias latipes ola-miR-23a-1-5p mature miRNA
• Sequence: 21 - GGAAUUCCUGGCAGAGUGAUUU - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-23a-3p

• Accession: MIMAT0022583
• Description: Oryzias latipes ola-miR-23a-3p mature miRNA
• Sequence: 61 - AUCACAUUGCCAGGGAUUUCCA - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8