miRBase entry: ola-mir-24a-3

Stem-loop ola-mir-24a-3

Accession

MI0019467

Description

Oryzias latipes ola-mir-24a-3 precursor miRNA

Sequence

ggacauuugggcugggauuccugugccuacugagcugauuaucaguccuauagaaccacUGGCUCAGUUCAGCAGGAACAGgaguccaguccgcucacgacu
.......((((((((.((((((((.(((.(((((((((...(((((...........))))).))))))))).))).)))))))))))))))).........

Structure

--ggacauu        g        g   a         uua     ccua 
         ugggcugg auuccugu ccu cugagcuga   ucagu    u
         |||||||| |||||||| ||| |||||||||   |||||    a
         gccugacc ugagGACA GGA GACUUGACU   GGUca    g
ucagcacuc        -        A   C         --C     ccaa

Annotation confidence Not enough data

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Genome context

9: 8309654-8309755 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-24a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-24a

Accession	MIMAT0022545
Description	Oryzias latipes ola-miR-24a mature miRNA
Sequence	60 - UGGCUCAGUUCAGCAGGAACAG - 81
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8