Stem-loop ola-mir-24a-3

Accession

MI0019467

Description

Oryzias latipes ola-mir-24a-3 precursor miRNA

Sequence

700206 reads, 4597.0 reads per million, 48 experiments

ggacauuugggcugggauuccugUGCCUACUGAGCUGAUUAUCAGuccuauagaaccacUGGCUCAGUUCAGCAGGAACAGgaguccaguccgcucacgacu
.......((((((((.((((((((.(((.(((((((((...(((((...........))))).))))))))).))).)))))))))))))))).........

Structure

--ggacauu        g        G   A         UUA     ccua 
         ugggcugg auuccugU CCU CUGAGCUGA   UCAGu    u
         |||||||| |||||||| ||| |||||||||   |||||    a
         gccugacc ugagGACA GGA GACUUGACU   GGUca    g
ucagcacuc        -        A   C         --C     ccaa 

Annotation confidence High

Genome context

9: 8309654-8309755 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-24a-3

Mature ola-miR-24a-3-5p

• Accession: MIMAT0057079
• Description: Oryzias latipes ola-miR-24a-3-5p mature miRNA
• Sequence: 24 - UGCCUACUGAGCUGAUUAUCAG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-24a-3p

• Accession: MIMAT0022545
• Description: Oryzias latipes ola-miR-24a-3p mature miRNA
• Sequence: 60 - UGGCUCAGUUCAGCAGGAACAG - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8