Stem-loop ola-mir-23b

Accession

MI0019468

Description

Oryzias latipes ola-mir-23b precursor miRNA

Literature search

2 open access papers mention ola-mir-23b
(10 sentences)

Sequence

409307 reads, 3471.0 reads per million, 49 experiments

uuucaugucugggcugugaGGGUUCCUGGCGUGCUGAUUUgugacuuaugauaaaAUCACAUUGCCAGGGAUUACCACacagccuugacccggacggcugcuauggcaa
.(((..(((.((((((((.((((((((((((((.((((((.............)))))))).))))))))))..)).)))))))).)))..)))..(((.....)))..

Structure

--------------u   au   u        a  --          -  C      gugac 
               uuc  guc gggcugug GG  GUUCCUGGCG UG UGAUUU     u
               |||  ||| |||||||| ||  |||||||||| || ||||||     u
               agg  cag uccgacaC CC  UAGGGACCGU AC ACUAaa     a
aacgguaucgucggc   cc   u        A  AU          U  -      auagu 

Annotation confidence High

Genome context

9: 8313668-8313776 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-23b

Mature ola-miR-23b-5p

• Accession: MIMAT0057110
• Description: Oryzias latipes ola-miR-23b-5p mature miRNA
• Sequence: 20 - GGGUUCCUGGCGUGCUGAUUU - 40
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-23b-3p

• Accession: MIMAT0022588
• Description: Oryzias latipes ola-miR-23b-3p mature miRNA
• Sequence: 56 - AUCACAUUGCCAGGGAUUACCAC - 78
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8