Stem-loop ola-mir-204

Accession

MI0019470

Description

Oryzias latipes ola-mir-204 precursor miRNA

Literature search

9 open access papers mention ola-mir-204
(527 sentences)

Sequence

4208830 reads, 57270.0 reads per million, 48 experiments

cuuacuaugacauguggacUUCCCUUUGUCAUCCUAUGCCUggaaucaaauaaaagggGGCUGGGAAGGCAAAGGGAUGCucagcugucauacaag
.....(((((((..(((.(.((((((((((.(((((.((((................))))))))).)))))))))).).)))..)))))))....

Structure

cuuac       ug   a U          A     U    ggaauca 
     uaugaca  ugg c UCCCUUUGUC UCCUA GCCU       a
     |||||||  ||| | |||||||||| ||||| ||||        
     auacugu  acu G AGGGAAACGG AGGGU CGGg       a
-gaac       cg   C U          A     -    ggaaaau 

Annotation confidence High

Genome context

9: 16361098-16361193 [-]

Mature ola-miR-204-5p

• Accession: MIMAT0022589
• Description: Oryzias latipes ola-miR-204-5p mature miRNA
• Sequence: 20 - UUCCCUUUGUCAUCCUAUGCCU - 41
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-204-3p

• Accession: MIMAT0057111
• Description: Oryzias latipes ola-miR-204-3p mature miRNA
• Sequence: 59 - GGCUGGGAAGGCAAAGGGAUGC - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8