Stem-loop ola-mir-218a-2

Accession

MI0019472

Description

Oryzias latipes ola-mir-218a-2 precursor miRNA

Sequence

870948 reads, 5762.0 reads per million, 45 experiments

gugcagcugucucUUGUGCUUGAUCUAACCAUGUggccccgccaguugugacuucaCAUGGUUCCGUCAAGCGCCAGGgaccgcgcggcac
((((.((.((((((.(((((((((..((((((((((...(((.....)))...))))))))))..))))))))).))))))...)).))))

Structure

    a  --u      U         CU          ccc   c 
gugc gc   gucucU GUGCUUGAU  AACCAUGUgg   cgc a
|||| ||   |||||| |||||||||  ||||||||||   ||| g
cacg cg   cagGGA CGCGAACUG  UUGGUACacu   gug u
    g  cgc      C         CC          uca   u 

Annotation confidence High

Genome context

10: 1526115-1526205 [+]

Mature ola-miR-218a-5p

• Accession: MIMAT0022529
• Description: Oryzias latipes ola-miR-218a-5p mature miRNA
• Sequence: 14 - UUGUGCUUGAUCUAACCAUGU - 34
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-218a-2-3p

• Accession: MIMAT0057067
• Description: Oryzias latipes ola-miR-218a-2-3p mature miRNA
• Sequence: 57 - CAUGGUUCCGUCAAGCGCCAGG - 78
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8